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Use cases
Changelog
GitHub
Site Navigation
Use cases
Changelog
GitHub
Data types
scRNA-seq
Standardize and append a dataset
Query artifacts
Analyze a collection in memory
Train a machine learning model on a collection
Concatenate datasets to a single array store
Bulk RNA-seq
Flow cytometry
Append a new dataset
Query & integrate data
Analyze the collection and save a result
Spatial
Query and analyze spatial data
Train a spatial ML model
Interactive visualization using Vitessce
Multi-modal
sc-imaging
Generate single-cell images
Featurize single-cell images
Identify autophagy-positive cells
EHR
Registries
Gene Ontology (GO)
CellTypist
Standardize metadata on-the-fly
RDF export & SPARQL queries
Data lineage
Project flow
GWS CRIPSRa analysis
Perform single cell analysis, integrate with CRISPRa screen
Analysis flow
Access public ontologies
Gene
Protein
Organism
CellLine
CellType
CellMarker
Tissue
Disease
Phenotype
Pathway
ExperimentalFactor
DevelopmentalStage
Ethnicity
Use cases
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